Dr. Roy's Publications
Publications 2023-2018 (as a Tenure-Track Assistant Professor)
27. Basnet U, Patil AR, Kulkarni A, Roy S#. Role of Stress-Survival Pathways and Transcriptomic Alterations in Progression of Colorectal Cancer: A Health Disparities Perspective. Int J Environ Res Public Health, 2021 May:18(11):5525. 34063993 (IF - 4.614)
26. Saha TT*, Roy S*, Dou Y, Zhang Y, Zou Z, Raikhel AS. Synergistic action of transcriptional repressors Krüppel homolog 1 and Hairy in mediating gene repression by juvenile hormone and its receptor Methoprene-tolerant. PLoS Genet., 2019 Oct: 15(10):e1008443. PMID: 31661489 (IF - 6.020)
25. Mathews BJ, … Roy S, … Vosshall L. Improved Aedes aegypti mosquito reference genome assembly enables 2 biological discovery and vector control. Nature, 2018 Nov: 563(7732):501-507. PMID: 30429615 (IF - 69.504)
24. Woods-Burnham L, Cajigas-Du Ross CK, Love A, Basu A, Durán AM, Sanchez-Hernandez ES, Martinez SR, Ortiz-Hernández GL, Stiel L, Wilson C, Montgomery S, Roy S and Casiano CA. Glucocorticoids Upregulate Stress Oncoproteins Associated with Therapy- Resistance in a Racially Diverse Panel of Prostate Cancer Cells. Scientific Reports. 2018 Oct: 8(1):15063. PMID: 30305646 (IF - 4.996)
* denotes equal contribution; # denotes the corresponding author.
Publications 2018-2013 (as a Postdoc and Assistant Research Professor)
23. Cajigas-Du Ross CK, Martinez SR, WoodsBurnham L, Alfonso M. Durán AM, Roy S, … Casiano CA. RNA sequencing reveals upregulation of a transcriptomic program associated with stemness in metastatic prostate cancer cells selected for taxane resistance. Oncotarget. 2018 July: 9(54): 30363-30384. PMID: 30100995 (IF - 4.345)
22. Roy S*#, Saha TT*, Zou Z and Raikhel AS# Regulatory pathways controlling female insect reproduction. Annual Reviews of Entomology. 2018 Jan: 63: 489 – 511. PMID: 29058980 (IF - 22.682)
21. Woods-Burnham L, Basu A, Cajigas-Du Ross CK, Love A, Yates C, De Leon M, Roy S#, Casiano CA#. Ancestry determination of the human PCa cell line, 22Rv1. Prostate. 2017 Dec: 77: 1601–1608. PMID: 29030865 (IF - 4.102)
20. Zhao B, Lucas KJ, Saha TT, Ha J, Kokoza VA, Roy S, Raikhel AS. MicroRNA-275 targets sarco/endoplasmic reticulum Ca2+ adenosine triphosphatase (SERCA) to control key functions in the mosquito gut. PLoS Genetics. 2017 Aug: 13(8): e1006943. PMID: 28787446 (IF - 6.020)
19. Roy S, Smykal V, Johnson L, Saha TT, Zou Z, Raikhel AS. Regulation of reproductive processes in female mosquitoes. Avances in Insect Physiol. 2016 Sept: Vol 51. Elsevier. (IF - 3.600)
18. Zhang Y, Zhao B, Roy S, Saha TT, Kokoza VA, Li M, Raikhel AS. MicroRNA-309 targets the Homeobox gene Six4 and controls ovarian development in the mosquito Aedes aegypti. PNAS. 2016 Aug: 113(33): E4828-36. PMID: 27489347 (IF - 12.779)
17. Saha TT, Shin SW, Dou W, Roy S, Zhao B, Hou Y, Wang XL, Zou Z, Girke T, Raikhel AS. Hairy and Groucho mediate the juvenile hormone receptor Methoprene-tolerant action in gene repression. PNAS. 2016 Feb: 113(6): E735-43. PMID: 26744312 (IF - 12.779)
16. Lucas KJ, Zhao B, Roy S, Gervaise AL, Raikhel AS. Mosquito-specific microRNA-1890 targets the juvenile hormone-regulated serine protease JHA15 in the female mosquito gut. RNA Biol. 2015 Dec: 12(12):1383-90. PMID: 26488481 (IF - 4.766)
15. Saha S, Roy S, Khuda-Bukhsh AR. Ultra-highly diluted plant extracts of Hydrastis canadensis and Marsdenia condurango induce epigenetic modifications and alter gene expression profiles in HeLa cells in vitro. Journal of Integr. Med. 2015 Nov: 13 (6), 400-411. PMID: 26559365 (IF - 3.951)
14. Roy S*, Saha TT*, Johnson L, Zhao B, Ha J, Backman, TW, Girke T, White KP, Zou Z, Raikhel AS. Regulation of Gene Expression Patterns in Mosquito Reproduction. PLoS Genet. 2015 Aug: 11(8): e1005450. PMID: 26274815 (IF - 6.020)
13. Hou Y, Wang XL, Saha TT, Roy S, Zhao B, Raikhel AS, Zou Z. Temporal Coordination of Carbohydrate Metabolism during Mosquito Reproduction. PLoS Genet. 2015 Jul: 11(7): e1005309. PMID: 26158648 (IF - 6.020)
12. Lucas KJ, Roy S, Ha J, Gervaise AL, Kokoza VA, Raikhel AS. MicroRNA-8 targets the Wingless signaling pathway in the female mosquito fat body to regulate reproductive processes. PNAS. 2015 Feb: 112(5):1440-5. PMID: 25605933 (IF - 12.779)
11. Liu S., Lucas K.J., Roy S., Ha J., Raikhel A.S. Mosquito-specific microRNA-1174 targets serine hydroxymethyltransferase to control key functions in the gut. PNAS. 2014 Oct: 111(40):14460-5. PMID: 25246546 (IF - 12.779)
10. Zhao B., Kokoza V.A., Saha T.T., Wang S., Roy S., Raikhel A.S. Regulation of the gut- specific carboxypeptidase: A study using the binary Gal4/UAS system in the mosquito Aedes aegypti. IBMB. 2014 Aug: 54C:1-10. PMID: 25152428 (IF - 4.421)
9. Saha SK, Roy S, Khuda-Bukhsh AR. Evidence in support of gene regulatory hypothesis: Gene expression profiling manifests homeopathy effect as more than placebo. Int J High Dilution Res. 2013 Dec: 12(45):162-167. (IF - 0.20)
8. Zou Z*, Saha TT*, Roy S*, Shin SW, Backman TW, Girke T, White KP, Raikhel AS. Juvenile hormone and its receptor Methoprene-tolerant control mosquito gene expression dynamics. PNAS. 2013 Jun: 110(24): E2173-81. PMID: 23633570 (IF - 12.779)
* denotes equal contribution, # denotes the corresponding author.
Publications 2013-2006 (as a Masters and Ph.D. student)
7. Roy S, Kagda M, Judelson Genome-wide prediction and functional validation of promoter motifs regulating gene expression in spore and infection stages of Phytophthora infestans. PLoS Pathog. 2013 Mar: 9(3): e1003182. PMID: 23516354 (IF - 7.464)
6. Roy S*, Poidevin L*, Jiang T, Judelson HS. Novel core promoter elements in oomycete pathogen Phytophthora infestans and their influence on expression detected by genome-wide analysis. BMC Genomics. 2013 Feb: 16:14:106. PMID: 23414203 (IF - 4.547)
5. Basu A, Banerjee H, Rojas H, Martinez SR, Roy S, Jia Z, Lilly MB, De-Léon M, Casiano CA. Differential expression of peroxiredoxins in prostate cancer: Consistent upregulation of PRDX3 and PRDX4. Prostate. 2011 May: 71(7): 755-65. PMID: 21031435 (IF - 4.102)
4. Haas BJ, …, Roy S, ..., Nusbaum C. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 2009 Sept: 461(7262): 393-8. PMID: 19741609 (IF - 69.504)
3. Xiang Q, Kim KS, Roy S, Judelson HS. A motif within a complex promoter from the oomycete Phytophthora infestans determines transcription during an intermediate stage of sporulation. Fungal Genet Biol. 2009 May: 46(5): 400-9. PMID: 19250972 (IF - 3.883)
2. Schnell S, Fortunato S, Roy S. Is the intrinsic disorder of proteins the cause of the scale-free architecture of protein-protein interaction networks? Proteomics. 2007 Mar: 17(6): 961-4. PMID: 17285562 (IF - 5.393)
1. Roy S, Schnell S, Radivojac P. Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map. Comput Biol Chem. 2006 Aug: 30(4): 241-8. PMID: 16798096 (IF - 3.737)